Variant report

Variant	rs1880283
Chromosome Location	chr2:76491231-76491232
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10084237	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10169075	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126521	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11673996	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11896158	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12328296	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476472	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12987628	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12989829	1.00[ASN][1000 genomes]
rs13005979	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014046	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358177	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358178	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358180	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358181	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401837	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401843	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401844	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405339	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405340	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405341	0.96[EUR][1000 genomes]
rs1405345	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519897	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526613	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526622	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526625	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526626	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526628	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526640	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526646	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526648	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526650	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526652	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1609009	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852364	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949923	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049550	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090688	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139466	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139468	0.96[EUR][1000 genomes]
rs2139469	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860734	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860735	0.91[EUR][1000 genomes]
rs2860736	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860741	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860742	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3961977	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980323	1.00[ASN][1000 genomes]
rs4241268	1.00[ASN][1000 genomes]
rs4444560	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852401	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4852404	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853208	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853224	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853225	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853235	0.80[EUR][1000 genomes]
rs4853236	0.87[EUR][1000 genomes]
rs4853237	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853239	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853240	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547060	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547062	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547063	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547073	1.00[ASN][1000 genomes]
rs6547074	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547076	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547077	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6547081	0.91[EUR][1000 genomes]
rs6714618	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718886	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725074	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731474	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6742237	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6743857	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747521	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758608	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7424136	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566339	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566454	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587657	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601253	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602197	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908960	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964439	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964440	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964441	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964443	0.91[EUR][1000 genomes]
rs975901	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874311	chr2:76389455-76492999	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv874312	chr2:76430941-76500077	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76484200-76491600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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