The 2.0 version of rSNPBase

Variant report

Variant rs12990778
Chromosome Location chr2:173074399-173074400
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173070000-173077800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
2 chr2:173070200-173078600 Weak transcription iPS-20b Cell Line embryonic stem cell
3 chr2:173070600-173076800 Enhancers Primary monocytes fromperipheralblood blood
4 chr2:173070600-173077600 Weak transcription iPS-18 Cell Line embryonic stem cell
5 chr2:173071800-173074600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
6 chr2:173072000-173074800 Enhancers Fetal Intestine Small intestine
7 chr2:173072400-173074400 Enhancers Fetal Muscle Leg muscle
8 chr2:173072400-173074800 Enhancers Fetal Intestine Large intestine
9 chr2:173072400-173075800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr2:173072600-173074400 Enhancers Primary hematopoietic stem cells blood
11 chr2:173072600-173074600 Enhancers Ovary ovary
12 chr2:173072600-173084200 Enhancers Breast Myoepithelial Primary Cells Breast
13 chr2:173072800-173074800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr2:173072800-173075600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr2:173073000-173074800 Enhancers HMEC breast
16 chr2:173073200-173074400 Enhancers Fetal Thymus thymus
17 chr2:173073200-173074600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr2:173073200-173074600 Enhancers Placenta Placenta
19 chr2:173073200-173074600 Enhancers Spleen Spleen
20 chr2:173073200-173074600 Enhancers Osteobl bone
21 chr2:173073200-173074800 Enhancers Fetal Adrenal Gland Adrenal Gland
22 chr2:173073200-173074800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
23 chr2:173073400-173074600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr2:173073400-173074600 Weak transcription Rectal Mucosa Donor 31 rectum
25 chr2:173073400-173076200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr2:173073400-173080400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr2:173073600-173074400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr2:173073600-173074400 Enhancers NH-A brain
29 chr2:173073600-173074600 Enhancers NHEK skin
30 chr2:173073600-173075400 Enhancers Primary neutrophils fromperipheralblood blood
31 chr2:173073800-173074400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr2:173074000-173075200 Weak transcription Small Intestine intestine
33 chr2:173074000-173075400 Enhancers Primary hematopoietic stem cells short term culture blood
34 chr2:173074000-173077200 Weak transcription Placenta Amnion Placenta Amnion
35 chr2:173074000-173078800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr2:173074000-173080400 Weak transcription Right Atrium heart
37 chr2:173074200-173074400 Enhancers NHLF lung
38 chr2:173074200-173074800 Enhancers HUVEC blood vessel

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Last update: Aug 31, 2015