Variant report
| Variant | rs12993836 |
|---|---|
| Chromosome Location | chr2:167907908-167907909 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:167906637..167909557-chr2:167924845..167927554,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs13017014 | 0.92[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs13017352 | 0.83[EUR][1000 genomes] |
| rs13417677 | 0.84[CEU][hapmap] |
| rs1511199 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap] |
| rs1511203 | 0.86[EUR][1000 genomes] |
| rs1511209 | 0.84[CEU][hapmap] |
| rs16852874 | 0.83[CEU][hapmap] |
| rs16852883 | 0.85[CEU][hapmap] |
| rs2043060 | 0.85[EUR][1000 genomes] |
| rs73972956 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529384 | chr2:167143465-167958752 | Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv875376 | chr2:167844513-168037489 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
