Variant report

Variant	rs16852883
Chromosome Location	chr2:167905503-167905504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12993836	0.85[CEU][hapmap]
rs13017014	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13017352	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1511202	0.81[CEU][hapmap]
rs1511203	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1511209	0.86[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs16852874	0.87[CEU][hapmap]
rs2043060	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35472201	0.81[CEU][hapmap]
rs3914147	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875376	chr2:167844513-168037489	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167905200-167905600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr2:167905200-167906600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:167905400-167905600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:167905400-167905800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:167905400-167905800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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