Variant report

Variant	rs13001783
Chromosome Location	chr2:100689652-100689653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100658557..100661534-chr2:100689369..100692116,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10192951	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10209201	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10211595	0.82[CHB][hapmap]
rs11682173	0.85[CEU][hapmap]
rs12996621	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13001130	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13020141	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13033732	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13402289	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13402299	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13430705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023468	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1821830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2118281	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34040706	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34714421	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35300735	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35730185	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35774174	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35840153	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35869550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4851243	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4851244	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4851250	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56037757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56935201	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58683655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59447631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60311127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60697219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750720	0.82[ASN][1000 genomes]
rs71413861	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7572939	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7596359	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9784000	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100664400-100699600	Weak transcription	Aorta	Aorta
2	chr2:100683000-100698200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:100683200-100719600	Weak transcription	Brain Germinal Matrix	brain
4	chr2:100684400-100690600	Weak transcription	Adipose Nuclei	Adipose
5	chr2:100686000-100698400	Strong transcription	Primary B cells from peripheral blood	blood
6	chr2:100687400-100690400	Weak transcription	Fetal Intestine Small	intestine
7	chr2:100688400-100690000	Enhancers	Right Ventricle	heart
8	chr2:100688400-100696800	Strong transcription	Primary B cells from cord blood	blood
9	chr2:100688400-100710800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:100688600-100690000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:100688600-100690000	Weak transcription	Fetal Lung	lung
12	chr2:100688600-100690000	Genic enhancers	Dnd41	blood
13	chr2:100688800-100689800	Enhancers	Lung	lung
14	chr2:100688800-100690200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:100688800-100696400	Weak transcription	Fetal Brain Male	brain
16	chr2:100689000-100689800	Weak transcription	Left Ventricle	heart
17	chr2:100689000-100689800	Weak transcription	Right Atrium	heart
18	chr2:100689000-100691200	Strong transcription	Primary hematopoietic stem cells	blood
19	chr2:100689000-100691400	Enhancers	Gastric	stomach
20	chr2:100689000-100691600	Weak transcription	Primary T cells from cord blood	blood
21	chr2:100689000-100693800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:100689000-100694400	Weak transcription	Thymus	Thymus
23	chr2:100689200-100689800	Strong transcription	Fetal Brain Female	brain
24	chr2:100689200-100690200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:100689200-100693600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr2:100689200-100696000	Weak transcription	Fetal Thymus	thymus
27	chr2:100689400-100693200	Enhancers	Fetal Heart	heart
28	chr2:100689600-100689800	Enhancers	Spleen	Spleen
29	chr2:100689600-100690000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:100689600-100691600	Enhancers	Ovary	ovary

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