Variant report

Variant	rs13020141
Chromosome Location	chr2:100653842-100653843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10192951	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10209201	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12996621	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13001130	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13001783	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13033732	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13402289	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13402299	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13430705	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17023468	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1821830	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2118281	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34040706	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34714421	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35300735	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35730185	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35774174	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35840153	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35869550	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4851243	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4851244	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4851250	0.87[AMR][1000 genomes]
rs56037757	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56935201	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58683655	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59447631	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60311127	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60697219	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71413861	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7572939	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7596359	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9784000	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3425414	chr2:100652945-100655493	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3361725	chr2:100653170-100655468	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100624800-100657800	Weak transcription	Brain Germinal Matrix	brain
2	chr2:100633600-100660600	Weak transcription	Lung	lung
3	chr2:100637200-100658400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:100639000-100660600	Weak transcription	Primary T cells from cord blood	blood
5	chr2:100639600-100657000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:100644600-100668400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:100646400-100662600	Weak transcription	Gastric	stomach
8	chr2:100648200-100666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:100650600-100656800	Weak transcription	Fetal Brain Female	brain
10	chr2:100651800-100659600	Weak transcription	Left Ventricle	heart
11	chr2:100652000-100656200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr2:100652800-100661400	Weak transcription	Ovary	ovary
13	chr2:100653000-100656000	Weak transcription	Primary B cells from cord blood	blood
14	chr2:100653200-100667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr2:100653600-100654600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:100653600-100656800	Weak transcription	Fetal Heart	heart
17	chr2:100653600-100657600	Weak transcription	Fetal Lung	lung
18	chr2:100653800-100657800	Weak transcription	Fetal Brain Male	brain

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