Variant report

Variant	rs13002436
Chromosome Location	chr2:21488596-21488597
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12472945	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13426161	0.97[ASN][1000 genomes]
rs1397400	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6545183	0.96[ASN][1000 genomes]
rs6718442	0.83[ASN][1000 genomes]
rs7584773	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs870223	0.98[ASN][1000 genomes]
rs870570	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs875919	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519215	chr2:21473751-21502727	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21473200-21488800	Enhancers	Brain Hippocampus Middle	brain
2	chr2:21479000-21490400	Weak transcription	Spleen	Spleen
3	chr2:21479400-21494800	Enhancers	Brain Substantia Nigra	brain
4	chr2:21479600-21489200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr2:21481600-21490200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:21483400-21490600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:21483600-21490200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:21485000-21490400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:21487000-21489800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr2:21487400-21488800	Strong transcription	Aorta	Aorta
11	chr2:21488000-21489800	Weak transcription	Brain Angular Gyrus	brain
12	chr2:21488000-21489800	Weak transcription	Brain Anterior Caudate	brain
13	chr2:21488000-21489800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:21488400-21488800	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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