Variant report

Variant	rs13426161
Chromosome Location	chr2:21491164-21491165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12472945	0.94[ASN][1000 genomes]
rs12478815	0.82[EUR][1000 genomes]
rs13002436	0.97[ASN][1000 genomes]
rs1397400	0.94[ASN][1000 genomes]
rs6545183	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6718442	0.80[ASN][1000 genomes]
rs6733564	0.82[EUR][1000 genomes]
rs7584773	0.90[ASN][1000 genomes]
rs870223	0.95[ASN][1000 genomes]
rs870570	0.94[ASN][1000 genomes]
rs875919	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519215	chr2:21473751-21502727	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv523572	chr2:21489083-21493269	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
5	nsv518468	chr2:21489083-21502727	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13426161	DNAJC27	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21479400-21494800	Enhancers	Brain Substantia Nigra	brain
2	chr2:21489000-21492600	Enhancers	Ovary	ovary
3	chr2:21489600-21495400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr2:21489800-21492000	Enhancers	Pancreas	Pancrea
5	chr2:21489800-21492200	Enhancers	Brain Hippocampus Middle	brain
6	chr2:21489800-21492400	Enhancers	Brain Angular Gyrus	brain
7	chr2:21489800-21494200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:21489800-21494600	Enhancers	Brain Anterior Caudate	brain
9	chr2:21489800-21494600	Enhancers	Brain Cingulate Gyrus	brain
10	chr2:21489800-21495200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:21490200-21491200	Bivalent Enhancer	Fetal Stomach	stomach
12	chr2:21490200-21494400	Enhancers	Fetal Kidney	kidney
13	chr2:21490400-21491600	Enhancers	Right Atrium	heart
14	chr2:21490400-21492200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:21490400-21492200	Enhancers	Spleen	Spleen
16	chr2:21490400-21493800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:21490600-21491400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:21490600-21492400	Weak transcription	Fetal Lung	lung
19	chr2:21490600-21494000	Enhancers	Fetal Intestine Large	intestine
20	chr2:21490600-21494200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:21490800-21491600	Enhancers	Aorta	Aorta
22	chr2:21490800-21491800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:21490800-21491800	Weak transcription	Left Ventricle	heart
24	chr2:21490800-21492000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr2:21490800-21493200	Weak transcription	K562	blood
26	chr2:21491000-21491200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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