Variant report

Variant	rs13003338
Chromosome Location	chr2:37044444-37044445
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37038416..37040674-chr2:37042878..37045165,2	MCF-7	breast:
2	chr2:37038445..37041439-chr2:37044172..37046404,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10200515	0.92[ASN][1000 genomes]
rs10200548	0.93[ASN][1000 genomes]
rs11124547	0.85[ASN][1000 genomes]
rs11124548	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11887295	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11892193	0.83[ASN][1000 genomes]
rs11899264	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11901202	0.86[ASN][1000 genomes]
rs11904798	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11904799	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13009450	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13016737	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13417089	0.92[ASN][1000 genomes]
rs13417363	0.92[ASN][1000 genomes]
rs4670169	0.87[ASN][1000 genomes]
rs4670170	0.85[ASN][1000 genomes]
rs4670172	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4670173	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4670175	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4670176	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4670177	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4670620	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670621	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4670622	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4670624	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4670625	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4670626	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4670627	0.98[ASN][1000 genomes]
rs56740767	0.82[ASN][1000 genomes]
rs57817021	0.88[ASN][1000 genomes]
rs60390214	0.86[ASN][1000 genomes]
rs72867902	0.88[ASN][1000 genomes]
rs7592382	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv428395	chr2:36990348-37300352	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv2682	chr2:37015550-37060432	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1011014	chr2:37027819-37095895	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv999465	chr2:37029347-37095895	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37042800-37044600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:37044000-37044600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:37044200-37046800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:37044200-37051000	Enhancers	Adipose Nuclei	Adipose
5	chr2:37044400-37045800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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