Variant report

Variant	rs13003362
Chromosome Location	chr2:191453018-191453019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10190016	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10202825	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs34447464	0.87[ASN][1000 genomes]
rs34529961	0.93[ASN][1000 genomes]
rs35225524	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35369059	1.00[ASN][1000 genomes]
rs36015572	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3811610	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs59629752	0.87[ASN][1000 genomes]
rs60668509	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834492	chr2:191438864-191646621	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191436800-191457000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:191443800-191456600	Weak transcription	Psoas Muscle	Psoas
3	chr2:191444200-191456800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:191448800-191453600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:191448800-191461600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:191449000-191457800	Weak transcription	Hela-S3	cervix
7	chr2:191450400-191454800	Weak transcription	Brain Anterior Caudate	brain
8	chr2:191450400-191455000	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:191450400-191469000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:191450600-191454600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:191450600-191456400	Weak transcription	GM12878-XiMat	blood
12	chr2:191450600-191464400	Weak transcription	Right Atrium	heart
13	chr2:191450600-191467000	Weak transcription	Brain Substantia Nigra	brain
14	chr2:191450600-191467200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr2:191450800-191454600	Weak transcription	Brain Angular Gyrus	brain
16	chr2:191451200-191457000	Weak transcription	NHDF-Ad	bronchial
17	chr2:191452200-191454000	Enhancers	K562	blood
18	chr2:191452200-191458000	Weak transcription	Left Ventricle	heart
19	chr2:191452800-191457400	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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