Variant report

Variant	rs60668509
Chromosome Location	chr2:191367964-191367965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191271278..191273188-chr2:191365942..191368392,2	K562	blood:
2	chr2:191362897..191364895-chr2:191367365..191369091,2	MCF-7	breast:
3	chr2:191366095..191368854-chr2:191371585..191374379,2	K562	blood:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13003362	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13004896	0.81[EUR][1000 genomes]
rs34121676	0.80[ASN][1000 genomes]
rs35225524	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35369059	0.82[ASN][1000 genomes]
rs36015572	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3811610	1.00[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191334200-191370200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:191334800-191394800	Weak transcription	HSMMtube	muscle
3	chr2:191343000-191372000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:191343400-191373800	Weak transcription	Colonic Mucosa	Colon
5	chr2:191349600-191394600	Weak transcription	NHLF	lung
6	chr2:191351200-191369600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:191351200-191373400	Weak transcription	Small Intestine	intestine
8	chr2:191351400-191385400	Weak transcription	NHEK	skin
9	chr2:191352200-191380600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:191352400-191381600	Weak transcription	Osteobl	bone
11	chr2:191354600-191394600	Weak transcription	HSMM	muscle
12	chr2:191354800-191369200	Weak transcription	HMEC	breast
13	chr2:191356400-191368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:191356600-191369800	Weak transcription	Adipose Nuclei	Adipose
15	chr2:191357200-191398200	Weak transcription	Fetal Kidney	kidney
16	chr2:191358400-191379200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:191359600-191371000	Weak transcription	K562	blood
18	chr2:191359600-191374800	Weak transcription	Fetal Heart	heart
19	chr2:191361000-191376000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr2:191361600-191370400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr2:191361600-191379800	Strong transcription	Fetal Thymus	thymus
22	chr2:191361800-191375800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr2:191361800-191376000	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr2:191362000-191371200	Strong transcription	Primary B cells from cord blood	blood
25	chr2:191362000-191371600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:191362000-191374000	Strong transcription	Primary hematopoietic stem cells	blood
27	chr2:191362000-191375200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr2:191362000-191375400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:191362000-191375400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:191362000-191375400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr2:191362200-191369000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr2:191362200-191371200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr2:191362200-191379200	Strong transcription	Dnd41	blood
34	chr2:191362400-191369000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr2:191362400-191369400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr2:191362400-191370200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr2:191362800-191398200	Weak transcription	Fetal Brain Male	brain
38	chr2:191363000-191374800	Weak transcription	Colon Smooth Muscle	Colon
39	chr2:191363200-191372000	Weak transcription	Psoas Muscle	Psoas
40	chr2:191363600-191368400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:191363600-191374200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:191364000-191372000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr2:191364000-191374000	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr2:191364200-191369800	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr2:191364200-191376200	Strong transcription	Primary T cells from cord blood	blood
46	chr2:191364600-191368000	Enhancers	Brain Substantia Nigra	brain
47	chr2:191364600-191369200	Strong transcription	Thymus	Thymus
48	chr2:191364600-191371000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr2:191364600-191371000	Strong transcription	Fetal Muscle Leg	muscle
50	chr2:191364800-191370200	Strong transcription	Fetal Intestine Large	intestine

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