Variant report

Variant	rs13004929
Chromosome Location	chr2:151166722-151166723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13021441	1.00[AFR][1000 genomes]
rs13028516	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs16827807	1.00[AFR][1000 genomes]
rs34339453	1.00[AFR][1000 genomes]
rs35743118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71413689	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151161400-151170800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:151165200-151167800	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr2:151165400-151168200	Enhancers	Stomach Mucosa	stomach
4	chr2:151165600-151167400	Enhancers	Duodenum Mucosa	Duodenum
5	chr2:151165800-151166800	Enhancers	Esophagus	oesophagus
6	chr2:151165800-151166800	Enhancers	A549	lung
7	chr2:151165800-151167000	Enhancers	Fetal Intestine Small	intestine
8	chr2:151165800-151168400	Enhancers	Fetal Intestine Large	intestine
9	chr2:151165800-151168600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:151166000-151166800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
11	chr2:151166000-151167000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr2:151166400-151166800	Flanking Active TSS	Colonic Mucosa	Colon
13	chr2:151166600-151166800	Enhancers	Gastric	stomach
14	chr2:151166600-151166800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr2:151166600-151167800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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