Variant report

Variant	rs35743118
Chromosome Location	chr2:151087930-151087931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13004929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13021441	1.00[AFR][1000 genomes]
rs13028516	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs16827807	1.00[AFR][1000 genomes]
rs34339453	1.00[AFR][1000 genomes]
rs71413689	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv834412	chr2:151014270-151116638	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv2968	chr2:151076820-151089705	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151083200-151091200	Weak transcription	Fetal Brain Female	brain
2	chr2:151085600-151090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:151085800-151090400	Weak transcription	Fetal Lung	lung
4	chr2:151085800-151090800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:151086000-151088000	Weak transcription	HUVEC	blood vessel
6	chr2:151086000-151090400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:151086200-151089600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:151086400-151088000	Weak transcription	Brain Germinal Matrix	brain
9	chr2:151086400-151089600	Weak transcription	NHDF-Ad	bronchial
10	chr2:151086400-151090400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:151086600-151088200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:151086800-151089600	Enhancers	Stomach Mucosa	stomach
13	chr2:151087600-151088400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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