Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55150702..55153122-chr2:55154482..55158457,3	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10196667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10746530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11125551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11904457	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12475185	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12989576	0.82[CHB][hapmap]
rs13020490	0.97[ASN][1000 genomes]
rs13026576	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13028800	1.00[ASN][1000 genomes]
rs17417648	0.86[JPT][hapmap]
rs17418111	0.93[ASN][1000 genomes]
rs36024305	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36063689	0.94[ASN][1000 genomes]
rs4233956	0.97[ASN][1000 genomes]
rs4504034	0.97[ASN][1000 genomes]
rs4525735	0.97[ASN][1000 genomes]
rs4671233	0.97[ASN][1000 genomes]
rs4671998	0.97[ASN][1000 genomes]
rs55777421	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6545462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs67721747	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13008105	RTN4	cis	Thyroid	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55150000-55168400	Weak transcription	Pancreas	Pancrea
2	chr2:55154200-55166600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:55154400-55168000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:55154800-55167800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:55156400-55163000	Weak transcription	Esophagus	oesophagus

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