Variant report

Variant	rs13010082
Chromosome Location	chr2:116042354-116042355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1040185	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10496482	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10496489	0.83[ASN][1000 genomes]
rs10864936	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10864939	0.84[ASN][1000 genomes]
rs11123286	0.81[ASN][1000 genomes]
rs11123287	0.81[ASN][1000 genomes]
rs11123290	0.83[ASN][1000 genomes]
rs11123291	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11674259	0.84[ASN][1000 genomes]
rs11674301	0.84[ASN][1000 genomes]
rs12463715	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12472611	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12616330	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13005750	0.82[ASN][1000 genomes]
rs13015427	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13028629	0.82[ASN][1000 genomes]
rs17823359	0.83[ASN][1000 genomes]
rs1812951	0.84[ASN][1000 genomes]
rs2049148	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34613117	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35668280	0.86[ASN][1000 genomes]
rs4257411	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4361132	0.85[AMR][1000 genomes]
rs4386327	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4436969	0.83[ASN][1000 genomes]
rs59259939	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs62167281	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62167319	0.84[ASN][1000 genomes]
rs6727747	0.87[ASN][1000 genomes]
rs7562666	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7593414	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116040600-116043600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:116041600-116042600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:116042200-116043200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:116042200-116043400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:116042200-116043400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:116042200-116043600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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