Variant report

Variant	rs4257411
Chromosome Location	chr2:115996784-115996785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10204084	0.93[ASN][1000 genomes]
rs1040185	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10496482	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10864936	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11123286	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11123287	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11123290	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11123291	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11675397	0.85[ASN][1000 genomes]
rs11693764	0.89[ASN][1000 genomes]
rs12463715	0.85[ASN][1000 genomes]
rs12472611	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12616330	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13010082	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13015427	0.83[ASN][1000 genomes]
rs17355679	0.89[ASN][1000 genomes]
rs2049148	0.81[ASN][1000 genomes]
rs34613117	0.81[ASN][1000 genomes]
rs4361132	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4386327	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59259939	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62167281	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562666	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7572788	0.89[ASN][1000 genomes]
rs7593121	0.85[ASN][1000 genomes]
rs7593414	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9653426	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv522754	chr2:115983419-116003178	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115996000-116007400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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