Variant report

Variant	rs9653426
Chromosome Location	chr2:115949774-115949775
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10204084	0.90[ASN][1000 genomes]
rs11123286	0.89[ASN][1000 genomes]
rs11123287	0.89[ASN][1000 genomes]
rs11123290	0.81[ASN][1000 genomes]
rs11675397	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11693764	0.84[ASN][1000 genomes]
rs12472611	0.87[ASN][1000 genomes]
rs12616330	0.89[ASN][1000 genomes]
rs17355679	0.94[ASN][1000 genomes]
rs4257411	0.84[ASN][1000 genomes]
rs62167281	0.84[ASN][1000 genomes]
rs7562666	0.84[ASN][1000 genomes]
rs7572788	0.85[ASN][1000 genomes]
rs7593121	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115942200-115949800	Weak transcription	Pancreas	Pancrea
2	chr2:115948200-115964000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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