Variant report

Variant	rs7572788
Chromosome Location	chr2:115942085-115942086
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10204084	0.83[ASN][1000 genomes]
rs10221894	0.88[ASN][1000 genomes]
rs10864936	0.81[ASN][1000 genomes]
rs11123286	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11123287	0.95[ASN][1000 genomes]
rs11123290	0.85[ASN][1000 genomes]
rs11123291	0.81[ASN][1000 genomes]
rs11675397	0.87[ASN][1000 genomes]
rs11693764	0.91[ASN][1000 genomes]
rs12472611	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12616330	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17355679	0.84[ASN][1000 genomes]
rs4257411	0.89[ASN][1000 genomes]
rs59259939	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62167281	0.89[ASN][1000 genomes]
rs7562666	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7593121	0.86[ASN][1000 genomes]
rs9653426	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1001542	chr2:115920847-116082585	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115932600-115946400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:115940600-115945400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:115941600-115942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr2:115942000-115942200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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