Variant report

Variant	rs13011181
Chromosome Location	chr2:100732446-100732447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100729149..100730802-chr2:100730864..100732886,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11123808	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11677607	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11679078	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11680485	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11680586	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11682173	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11686599	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11689956	0.85[EUR][1000 genomes]
rs11691486	0.85[EUR][1000 genomes]
rs11692215	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12712069	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12712072	0.80[EUR][1000 genomes]
rs13000759	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13010436	0.85[EUR][1000 genomes]
rs13011874	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13019618	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13022707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13028981	0.86[EUR][1000 genomes]
rs35869550	0.86[AFR][1000 genomes]
rs3748927	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4850920	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4851243	0.86[AFR][1000 genomes]
rs4851250	0.86[AFR][1000 genomes]
rs4851254	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4851262	0.85[EUR][1000 genomes]
rs56935201	0.86[AFR][1000 genomes]
rs58683655	0.86[AFR][1000 genomes]
rs6713524	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7583067	0.85[EUR][1000 genomes]
rs7596385	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100730200-100742200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:100730400-100732600	Enhancers	Dnd41	blood
3	chr2:100730800-100746400	Weak transcription	Spleen	Spleen
4	chr2:100731400-100734000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:100731800-100742000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:100732000-100733400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr2:100732000-100733600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr2:100732000-100734200	Weak transcription	Fetal Thymus	thymus
9	chr2:100732000-100735400	Weak transcription	Thymus	Thymus
10	chr2:100732000-100749400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:100732000-100754400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:100732200-100736000	Weak transcription	Primary T cells from cord blood	blood
13	chr2:100732400-100732600	Genic enhancers	Primary B cells from cord blood	blood
14	chr2:100732400-100736000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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