Variant report

Variant	rs13011419
Chromosome Location	chr2:211944178-211944179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10497941	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16845301	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs319710	0.82[ASN][1000 genomes]
rs319729	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56393454	1.00[ASN][1000 genomes]
rs61141408	0.87[ASN][1000 genomes]
rs61181335	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6435599	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6738260	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9678014	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875772	chr2:211893388-211946057	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211943000-211949200	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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