Variant report

Variant	rs61181335
Chromosome Location	chr2:211949682-211949683
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10497941	0.81[ASN][1000 genomes]
rs13011419	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16845301	0.93[ASN][1000 genomes]
rs319710	0.88[ASN][1000 genomes]
rs319729	0.93[ASN][1000 genomes]
rs56393454	0.93[ASN][1000 genomes]
rs61141408	0.81[ASN][1000 genomes]
rs6435599	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6738260	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs697663	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012193	chr2:211684524-212072213	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834521	chr2:211918881-212057872	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211949000-211950200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:211949200-211950000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr2:211949200-211950000	Enhancers	Brain Germinal Matrix	brain
4	chr2:211949400-211950400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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