Variant report

Variant	rs13014074
Chromosome Location	chr2:178669897-178669898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12987515	1.00[AFR][1000 genomes]
rs12994400	0.81[EUR][1000 genomes]
rs13002245	1.00[AFR][1000 genomes]
rs13004037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13010041	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13012088	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13022805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13026166	0.83[EUR][1000 genomes]
rs13027484	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13033904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17329811	0.83[EUR][1000 genomes]
rs34171827	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34356580	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34752624	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34956941	0.83[EUR][1000 genomes]
rs35305315	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35391362	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35391652	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35586165	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6756606	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71423505	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71423507	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71423508	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71423514	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7569826	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7574975	1.00[AFR][1000 genomes]
rs7588187	0.83[EUR][1000 genomes]
rs7588301	0.83[EUR][1000 genomes]
rs7592278	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7596644	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7605249	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583690	chr2:178638381-178712283	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178663200-178670000	Weak transcription	Adipose Nuclei	Adipose
2	chr2:178669400-178671800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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