Variant report
| Variant | rs7569826 |
|---|---|
| Chromosome Location | chr2:178680649-178680650 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12994400 | 0.81[EUR][1000 genomes] |
| rs13004037 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13010041 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13012088 | 0.83[EUR][1000 genomes] |
| rs13014074 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13022805 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13026166 | 0.83[EUR][1000 genomes] |
| rs13027484 | 0.83[EUR][1000 genomes] |
| rs13033904 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17329811 | 0.83[EUR][1000 genomes] |
| rs34171827 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs34356580 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs34752624 | 0.83[EUR][1000 genomes] |
| rs34956941 | 0.83[EUR][1000 genomes] |
| rs35305315 | 0.83[EUR][1000 genomes] |
| rs35391362 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35391652 | 0.83[EUR][1000 genomes] |
| rs35586165 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6756606 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs71423505 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs71423507 | 0.87[EUR][1000 genomes] |
| rs71423508 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs71423514 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7588187 | 0.83[EUR][1000 genomes] |
| rs7588301 | 0.83[EUR][1000 genomes] |
| rs7592278 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7596644 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7605249 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999086 | chr2:178262348-178773585 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv536055 | chr2:178262348-178773585 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv583690 | chr2:178638381-178712283 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv19617 | chr2:178678786-178684838 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:178674200-178681600 | Weak transcription | Liver | Liver |
