Variant report

Variant	rs13016849
Chromosome Location	chr2:172986343-172986344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10930511	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1843758	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2171321	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6433331	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7572413	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7604615	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172983400-172986400	Enhancers	HepG2	liver
2	chr2:172983400-172986600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:172983400-172986800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:172983400-172987600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:172984000-172987400	Enhancers	HMEC	breast
6	chr2:172985400-172986400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:172985800-172986600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:172985800-172986600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:172986000-172986800	Enhancers	NHDF-Ad	bronchial
10	chr2:172986200-172986400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:172986200-172986600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:172986200-172986600	Enhancers	Osteobl	bone
13	chr2:172986200-172986800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:172986200-172986800	Flanking Active TSS	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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