Variant report

Variant	rs1843758
Chromosome Location	chr2:172997770-172997771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10930511	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10930515	0.84[AMR][1000 genomes]
rs11902590	0.84[AMR][1000 genomes]
rs13016849	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2171321	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6433331	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7572413	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7604615	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827284	chr2:172997770-173006567	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1843758	OLA1	cis	cerebellum	SCAN
rs1843758	MAP4	trans	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172995800-172999400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:172996400-172998400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:172996800-172998000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr2:172996800-172998200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:172996800-172998400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:172997200-172998200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:172997200-172998400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:172997400-172998800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:172997600-172997800	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
10	chr2:172997600-172998000	Enhancers	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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