Variant report

Variant	rs13017949
Chromosome Location	chr2:58488300-58488301
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12614056	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12616896	0.80[ASN][1000 genomes]
rs12618143	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12713378	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34569124	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34613444	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61746304	0.81[ASN][1000 genomes]
rs9973679	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9973912	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999042	chr2:58326123-58530903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv535734	chr2:58326123-58530903	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58488000-58489000	Enhancers	HepG2	liver
2	chr2:58488200-58488800	Enhancers	A549	lung
3	chr2:58488200-58489200	Enhancers	Stomach Mucosa	stomach
4	chr2:58488200-58489600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links