Variant report

Variant	rs34613444
Chromosome Location	chr2:58499373-58499374
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12614056	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12618143	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12713378	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13017949	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3821211	1.00[AFR][1000 genomes]
rs9973679	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9973912	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999042	chr2:58326123-58530903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv535734	chr2:58326123-58530903	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58496400-58500000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:58498600-58500000	Enhancers	Brain Substantia Nigra	brain
3	chr2:58498800-58499400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:58499000-58499400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:58499000-58499400	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:58499000-58499400	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr2:58499200-58499400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links