Variant report

Variant	rs13019175
Chromosome Location	chr2:40773409-40773410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12989012	0.95[EUR][1000 genomes]
rs12992540	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12992598	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13018810	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13019183	0.84[EUR][1000 genomes]
rs13019201	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034467	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34106653	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35422863	0.89[EUR][1000 genomes]
rs35951633	0.80[ASN][1000 genomes]
rs57007180	0.89[EUR][1000 genomes]
rs60794473	0.95[EUR][1000 genomes]
rs61356646	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61702121	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62149456	0.80[ASN][1000 genomes]
rs7561779	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40757800-40774800	Weak transcription	Small Intestine	intestine
2	chr2:40767800-40774200	Weak transcription	Fetal Intestine Small	intestine
3	chr2:40768800-40778800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr2:40771600-40773600	Enhancers	Fetal Heart	heart
5	chr2:40771600-40774400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:40772800-40774600	Enhancers	Adipose Nuclei	Adipose
7	chr2:40773400-40774800	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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