Variant report

Variant	rs13034467
Chromosome Location	chr2:40768755-40768756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12989012	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12992540	0.83[ASN][1000 genomes]
rs12992598	0.80[ASN][1000 genomes]
rs13001437	0.95[EUR][1000 genomes]
rs13003735	0.95[EUR][1000 genomes]
rs13018810	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13019175	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13019183	0.93[AMR][1000 genomes]
rs13019201	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17026064	0.82[EUR][1000 genomes]
rs17026128	0.95[EUR][1000 genomes]
rs34106653	0.83[ASN][1000 genomes]
rs34186538	0.82[EUR][1000 genomes]
rs34205507	0.82[EUR][1000 genomes]
rs34214503	0.82[EUR][1000 genomes]
rs34272753	0.82[EUR][1000 genomes]
rs34446865	0.95[EUR][1000 genomes]
rs34466654	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34802220	0.95[EUR][1000 genomes]
rs34875537	0.81[ASN][1000 genomes]
rs34895858	0.95[EUR][1000 genomes]
rs35306270	0.82[EUR][1000 genomes]
rs35422863	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35520511	0.82[EUR][1000 genomes]
rs35951633	0.83[ASN][1000 genomes]
rs4140728	0.82[EUR][1000 genomes]
rs57007180	0.85[EUR][1000 genomes]
rs58398246	0.82[EUR][1000 genomes]
rs60794473	0.93[AMR][1000 genomes]
rs61356646	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61702121	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62149456	0.83[ASN][1000 genomes]
rs62149458	0.80[ASN][1000 genomes]
rs67526252	0.93[AMR][1000 genomes]
rs71441105	0.95[EUR][1000 genomes]
rs7561779	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1823469	chr2:40764167-40768902	Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv1835048	chr2:40764167-40768902	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv441753	chr2:40764167-40768902	Enhancers Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	esv3460444	chr2:40764798-40772027	Enhancers Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	esv3460445	chr2:40764798-40772027	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40757800-40774800	Weak transcription	Small Intestine	intestine
2	chr2:40767600-40768800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:40767800-40774200	Weak transcription	Fetal Intestine Small	intestine
4	chr2:40768200-40770400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:40768200-40770400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:40768400-40770200	Weak transcription	Fetal Heart	heart
7	chr2:40768600-40771000	Weak transcription	Duodenum Mucosa	Duodenum

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