Variant report

Variant	rs4140728
Chromosome Location	chr2:40698112-40698113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13001437	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13003735	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13014062	0.84[EUR][1000 genomes]
rs13020531	0.84[EUR][1000 genomes]
rs13025964	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13026982	0.84[EUR][1000 genomes]
rs13034467	0.82[EUR][1000 genomes]
rs17026064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17026071	0.84[EUR][1000 genomes]
rs17026128	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34076394	0.84[EUR][1000 genomes]
rs34144937	0.84[EUR][1000 genomes]
rs34186538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34205507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34214503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34272753	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34446865	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34466654	0.86[EUR][1000 genomes]
rs34802220	0.86[EUR][1000 genomes]
rs34895858	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34923862	0.84[EUR][1000 genomes]
rs35139526	0.84[EUR][1000 genomes]
rs35306270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35520511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35963461	0.84[EUR][1000 genomes]
rs4952415	0.84[EUR][1000 genomes]
rs4993292	0.91[EUR][1000 genomes]
rs58398246	0.94[AMR][1000 genomes]
rs61181649	0.84[EUR][1000 genomes]
rs6736874	0.93[ASN][1000 genomes]
rs71439299	0.80[ASN][1000 genomes]
rs71441105	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2757794	chr2:40547947-40733776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759044	chr2:40547947-40733776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv2700	chr2:40667461-40712805	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40688600-40698200	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:40690600-40698600	Weak transcription	Right Ventricle	heart
3	chr2:40692200-40709600	Weak transcription	Left Ventricle	heart
4	chr2:40697000-40698400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr2:40698000-40698600	Enhancers	Fetal Heart	heart
6	chr2:40698000-40699000	Enhancers	Primary B cells from cord blood	blood
7	chr2:40698000-40699000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:40698000-40702400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links