Variant report

Variant	rs34923862
Chromosome Location	chr2:40697194-40697195
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10490255	0.89[AMR][1000 genomes]
rs12991033	0.89[AMR][1000 genomes]
rs13010657	0.87[AMR][1000 genomes]
rs13012895	0.87[AMR][1000 genomes]
rs13014062	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13017279	0.83[AMR][1000 genomes]
rs13017846	0.83[AMR][1000 genomes]
rs13019501	0.87[AMR][1000 genomes]
rs13020531	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13026982	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13029763	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17026051	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17026064	0.84[EUR][1000 genomes]
rs17026071	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17026106	0.89[AMR][1000 genomes]
rs17026114	0.83[AMR][1000 genomes]
rs17026131	0.81[AMR][1000 genomes]
rs17026148	0.85[AMR][1000 genomes]
rs17026152	0.83[AMR][1000 genomes]
rs17026156	0.83[AMR][1000 genomes]
rs2098477	0.83[AMR][1000 genomes]
rs2098478	0.83[AMR][1000 genomes]
rs2193565	0.83[AMR][1000 genomes]
rs34076394	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34144937	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34186538	0.84[EUR][1000 genomes]
rs34205507	0.84[EUR][1000 genomes]
rs34214503	0.84[EUR][1000 genomes]
rs34272753	0.84[EUR][1000 genomes]
rs34766086	0.83[AMR][1000 genomes]
rs35014850	0.83[AMR][1000 genomes]
rs35139526	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35306270	0.84[EUR][1000 genomes]
rs35455710	0.87[AMR][1000 genomes]
rs35520511	0.84[EUR][1000 genomes]
rs35537386	0.87[AMR][1000 genomes]
rs35963461	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36011854	0.89[AMR][1000 genomes]
rs36079027	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3796079	0.81[AMR][1000 genomes]
rs3796080	0.81[AMR][1000 genomes]
rs4140728	0.84[EUR][1000 genomes]
rs4952415	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4952632	0.85[AMR][1000 genomes]
rs60079242	0.81[AMR][1000 genomes]
rs61181649	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67014132	0.87[AMR][1000 genomes]
rs71426871	0.83[AMR][1000 genomes]
rs71441106	0.85[AMR][1000 genomes]
rs71441107	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2757794	chr2:40547947-40733776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759044	chr2:40547947-40733776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv2700	chr2:40667461-40712805	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40688600-40698200	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:40690600-40698600	Weak transcription	Right Ventricle	heart
3	chr2:40692200-40709600	Weak transcription	Left Ventricle	heart
4	chr2:40696600-40698000	Weak transcription	Fetal Heart	heart
5	chr2:40697000-40698400	Enhancers	Monocytes-CD14+_RO01746	blood

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