Variant report

Variant	rs17026106
Chromosome Location	chr2:40738497-40738498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10490255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1072384	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12052800	0.81[TSI][hapmap]
rs12988659	0.90[TSI][hapmap]
rs12991033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12997023	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12997042	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002045	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13010657	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13010889	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13012895	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13014062	0.87[AMR][1000 genomes]
rs13017237	0.90[TSI][hapmap]
rs13017279	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13017846	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13019501	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13020186	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13020198	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13020531	0.89[AMR][1000 genomes]
rs13026826	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13026982	0.85[AMR][1000 genomes]
rs13028820	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13029763	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17026051	0.92[AMR][1000 genomes]
rs17026071	0.84[AMR][1000 genomes]
rs17026114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17026131	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17026148	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17026152	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17026155	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17026156	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2098477	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2098478	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2193563	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2193565	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2373886	0.91[AFR][1000 genomes]
rs34076394	0.89[AMR][1000 genomes]
rs34766086	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34923862	0.89[AMR][1000 genomes]
rs35014850	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35139526	0.89[AMR][1000 genomes]
rs35450971	0.99[ASN][1000 genomes]
rs35455710	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35537386	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36011854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3796079	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3796080	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4952415	0.89[AMR][1000 genomes]
rs4952632	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60079242	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61181649	0.87[AMR][1000 genomes]
rs67014132	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71426871	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71441106	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71441107	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789739	0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873917	chr2:40710953-41015998	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40734800-40740600	Active TSS	Right Atrium	heart
2	chr2:40736000-40740000	Active TSS	Right Ventricle	heart
3	chr2:40736800-40738600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr2:40736800-40740200	Active TSS	Stomach Smooth Muscle	stomach
5	chr2:40737200-40739600	ZNF genes & repeats	Fetal Heart	heart
6	chr2:40737400-40740200	Active TSS	Colon Smooth Muscle	Colon
7	chr2:40737600-40739600	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr2:40737600-40740000	Active TSS	Rectal Smooth Muscle	rectum
9	chr2:40737800-40738800	Weak transcription	Left Ventricle	heart
10	chr2:40738000-40738800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr2:40738000-40739000	Enhancers	Fetal Brain Male	brain
12	chr2:40738200-40738600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:40738200-40738600	Enhancers	Hela-S3	cervix
14	chr2:40738200-40738600	Enhancers	HUVEC	blood vessel
15	chr2:40738200-40738600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr2:40738200-40739600	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr2:40738400-40738600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:40738400-40738600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:40738400-40738600	Enhancers	Adipose Nuclei	Adipose
20	chr2:40738400-40738600	Enhancers	Osteobl	bone
21	chr2:40738400-40739000	Active TSS	Fetal Brain Female	brain
22	chr2:40738400-40739000	Enhancers	Fetal Lung	lung
23	chr2:40738400-40739400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links