Variant report

Variant	rs13020036
Chromosome Location	chr2:10762486-10762487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10761784..10763468-chr2:10774703..10777670,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13015561	1.00[EUR][1000 genomes]
rs13017433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2110777	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs34085274	0.96[EUR][1000 genomes]
rs35841482	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4668690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv833370	chr2:10625149-10785402	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10725600-10793400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:10725800-10787000	Weak transcription	Fetal Heart	heart
3	chr2:10729400-10781800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:10729400-10798400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:10730800-10774400	Weak transcription	Psoas Muscle	Psoas
6	chr2:10732000-10777600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:10738400-10766600	Weak transcription	Fetal Kidney	kidney
8	chr2:10740200-10782000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:10742400-10773800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr2:10742400-10774400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:10742600-10772200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr2:10742600-10791000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:10742800-10782400	Weak transcription	Esophagus	oesophagus
14	chr2:10744400-10777000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:10745200-10772400	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:10746400-10764000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:10746600-10777000	Weak transcription	Colonic Mucosa	Colon
18	chr2:10746600-10781800	Weak transcription	Right Ventricle	heart
19	chr2:10746800-10774000	Weak transcription	Spleen	Spleen
20	chr2:10746800-10774400	Weak transcription	HSMMtube	muscle
21	chr2:10746800-10781800	Weak transcription	Pancreas	Pancrea
22	chr2:10747000-10781800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:10749400-10774200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr2:10753600-10792800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:10754800-10796000	Weak transcription	Small Intestine	intestine
26	chr2:10755600-10772400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr2:10756000-10767200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr2:10756000-10772200	Weak transcription	HMEC	breast
29	chr2:10756200-10795800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr2:10756200-10828400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr2:10756800-10763000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:10757000-10764400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr2:10757000-10765800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:10757000-10765800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr2:10757600-10776600	Weak transcription	Hela-S3	cervix
36	chr2:10757600-10777600	Weak transcription	Brain Substantia Nigra	brain
37	chr2:10757800-10774400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:10758000-10782000	Weak transcription	Brain Hippocampus Middle	brain
39	chr2:10758200-10773000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr2:10758600-10763600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr2:10758600-10773800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr2:10758800-10765400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:10759200-10767200	Strong transcription	Primary B cells from cord blood	blood
44	chr2:10759600-10764400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:10759800-10762600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr2:10759800-10767400	Strong transcription	Liver	Liver
47	chr2:10759800-10772600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:10760000-10763800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:10760000-10764000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr2:10760200-10773000	Weak transcription	Fetal Lung	lung

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