Variant report

Variant	rs34085274
Chromosome Location	chr2:10801588-10801589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10719698..10722535-chr2:10800547..10802528,2	MCF-7	breast:
2	chr2:10582625..10584747-chr2:10800215..10801881,2	K562	blood:
3	chr2:10582625..10589837-chr2:10797943..10803608,8	K562	blood:
4	chr2:10260533..10262155-chr2:10800137..10801899,2	MCF-7	breast:
5	chr2:10799629..10802303-chr2:10808708..10811673,3	K562	blood:
6	chr2:10575512..10577802-chr2:10798677..10801641,2	K562	blood:
7	chr2:10799286..10801615-chr2:10807148..10810478,3	K562	blood:

Variant related genes	Relation type
ENSG00000115758	Chromatin interaction
ENSG00000257135	Chromatin interaction
ENSG00000272524	Chromatin interaction
ENSG00000206633	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13015561	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13017433	0.92[EUR][1000 genomes]
rs13020036	0.96[EUR][1000 genomes]
rs2110777	0.94[EUR][1000 genomes]
rs35502094	0.88[ASN][1000 genomes]
rs35841482	0.96[EUR][1000 genomes]
rs73915077	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10756200-10828400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10772200-10808400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:10776200-10803000	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:10779600-10803600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:10779600-10808400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr2:10781800-10803000	Strong transcription	Adipose Nuclei	Adipose
7	chr2:10782000-10803200	Strong transcription	Dnd41	blood
8	chr2:10782200-10808200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:10784800-10803200	Strong transcription	A549	lung
10	chr2:10786200-10802800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:10786200-10803600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:10786400-10809200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:10786600-10808400	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr2:10786800-10803600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:10787000-10803200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:10787000-10808800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:10787200-10802600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr2:10787400-10808400	Strong transcription	Placenta	Placenta
19	chr2:10787400-10808400	Strong transcription	Fetal Stomach	stomach
20	chr2:10788000-10803400	Strong transcription	Stomach Smooth Muscle	stomach
21	chr2:10788000-10827400	Weak transcription	Fetal Brain Male	brain
22	chr2:10788400-10828000	Weak transcription	Fetal Heart	heart
23	chr2:10789000-10820600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr2:10789200-10803200	Strong transcription	Fetal Muscle Leg	muscle
25	chr2:10789400-10807800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr2:10789400-10808400	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:10790000-10808400	Strong transcription	Fetal Thymus	thymus
28	chr2:10791600-10808200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr2:10792800-10808200	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr2:10793800-10828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:10794000-10823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr2:10794200-10817200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr2:10794600-10801800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:10794600-10828200	Weak transcription	Stomach Mucosa	stomach
35	chr2:10794600-10828400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:10794800-10802000	Weak transcription	Fetal Kidney	kidney
37	chr2:10794800-10803200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr2:10794800-10804600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr2:10795000-10806800	Strong transcription	Thymus	Thymus
40	chr2:10795200-10828800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr2:10795400-10804600	Weak transcription	Spleen	Spleen
42	chr2:10795600-10808200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr2:10795800-10802600	Strong transcription	Primary hematopoietic stem cells	blood
44	chr2:10796000-10808400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr2:10796200-10802200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:10796200-10806000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr2:10796200-10807400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr2:10796600-10802200	Strong transcription	GM12878-XiMat	blood
49	chr2:10796600-10808800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr2:10796800-10804000	Weak transcription	Small Intestine	intestine

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