Variant report

Variant	rs13021245
Chromosome Location	chr2:55165772-55165773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10496038	1.00[MEX][hapmap]
rs11677099	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs11695757	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11696046	1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes]
rs11894868	1.00[MEX][hapmap]
rs12997217	0.91[ASN][1000 genomes]
rs13004152	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13030462	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13033042	0.85[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]
rs34954881	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35363087	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7595814	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv582029	chr2:55159043-55204498	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55150000-55168400	Weak transcription	Pancreas	Pancrea
2	chr2:55154200-55166600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:55154400-55168000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:55154800-55167800	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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