Variant report

Variant	rs35363087
Chromosome Location	chr2:55168190-55168191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11695757	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11696046	0.91[EUR][1000 genomes]
rs12996653	0.85[EUR][1000 genomes]
rs12997217	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13004152	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13021245	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34954881	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv582029	chr2:55159043-55204498	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55150000-55168400	Weak transcription	Pancreas	Pancrea
2	chr2:55165800-55169200	Enhancers	Fetal Muscle Leg	muscle
3	chr2:55166200-55169000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:55166200-55172800	Weak transcription	Gastric	stomach
5	chr2:55167000-55168400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:55167600-55168400	Enhancers	Brain Anterior Caudate	brain
7	chr2:55167600-55168400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr2:55167600-55169000	Enhancers	HepG2	liver
9	chr2:55167800-55168600	Enhancers	Brain Substantia Nigra	brain
10	chr2:55167800-55169000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:55167800-55169000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:55167800-55169800	Enhancers	Brain Hippocampus Middle	brain
13	chr2:55167800-55170000	Enhancers	Brain Angular Gyrus	brain
14	chr2:55168000-55168600	Enhancers	Brain Cingulate Gyrus	brain
15	chr2:55168000-55169200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr2:55168000-55169200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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