Variant report

Variant	rs13023650
Chromosome Location	chr2:111830608-111830609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:111823035..111832129-chr2:111873853..111881438,12	MCF-7	breast:
2	chr2:111827096..111829604-chr2:111830038..111832886,2	K562	blood:
3	chr2:111824420..111826196-chr2:111828517..111830789,2	K562	blood:

Variant related genes	Relation type
ENSG00000153094	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12614702	1.00[JPT][hapmap]
rs13013329	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs13015135	1.00[CEU][hapmap]
rs13018717	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13018779	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13024581	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13030892	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13032068	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034863	0.90[EUR][1000 genomes]
rs17483962	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17549841	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2118905	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118906	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2118907	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2118908	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34121532	0.90[EUR][1000 genomes]
rs34404181	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34446964	0.90[EUR][1000 genomes]
rs34791521	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34964918	0.90[EUR][1000 genomes]
rs35752100	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35812219	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35823383	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35875858	0.90[EUR][1000 genomes]
rs35888108	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36091399	0.90[EUR][1000 genomes]
rs71431134	0.90[EUR][1000 genomes]
rs71431135	0.86[EUR][1000 genomes]
rs71431136	0.90[EUR][1000 genomes]
rs71431137	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431138	0.92[EUR][1000 genomes]
rs71431140	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71431142	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431143	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431145	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431149	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431151	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71431152	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834331	chr2:111812139-112004678	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111826200-111831600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:111826400-111834000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:111830400-111830800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:111830400-111831000	Enhancers	HUVEC	blood vessel
5	chr2:111830400-111831600	Weak transcription	Fetal Lung	lung
6	chr2:111830400-111832200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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