Variant report

Variant	rs35875858
Chromosome Location	chr2:111811106-111811107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs13013329	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13018717	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13018779	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13023650	0.90[EUR][1000 genomes]
rs13024581	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030892	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032068	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13034863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17483962	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549841	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118905	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2118906	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118907	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2118908	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34121532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34404181	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34446964	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34791521	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34964918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35752100	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35812219	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35823383	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35888108	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36091399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56308728	0.84[ASN][1000 genomes]
rs60560514	0.91[AFR][1000 genomes]
rs71431134	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431135	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71431137	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71431138	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431140	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431142	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71431143	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71431145	0.90[EUR][1000 genomes]
rs71431149	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71431151	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71431152	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111787800-111825400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:111806600-111813400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:111807200-111812600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:111807800-111811600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:111808200-111812400	Weak transcription	Fetal Kidney	kidney
6	chr2:111808400-111812600	Weak transcription	Pancreas	Pancrea
7	chr2:111808400-111812800	Weak transcription	Thymus	Thymus
8	chr2:111808600-111811600	Weak transcription	Fetal Thymus	thymus
9	chr2:111808600-111812800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:111808800-111811600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr2:111809800-111811800	Weak transcription	Primary B cells from cord blood	blood
12	chr2:111810000-111812200	Enhancers	Right Ventricle	heart
13	chr2:111810200-111816800	Enhancers	Primary B cells from peripheral blood	blood
14	chr2:111810400-111812200	Enhancers	Fetal Heart	heart
15	chr2:111810400-111812800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr2:111810600-111811800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr2:111810600-111812000	Weak transcription	Primary T cells from cord blood	blood
18	chr2:111810600-111812600	Weak transcription	Spleen	Spleen
19	chr2:111810800-111811800	Enhancers	Left Ventricle	heart
20	chr2:111811000-111813000	Enhancers	GM12878-XiMat	blood

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