Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10166496	1.00[CEU][hapmap]
rs10169266	1.00[CEU][hapmap]
rs10490016	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11563211	1.00[CEU][hapmap]
rs12185625	1.00[JPT][hapmap]
rs12472151	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12992084	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13004520	0.91[EUR][1000 genomes]
rs13020968	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17863848	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17864749	0.94[EUR][1000 genomes]
rs17868387	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28946910	1.00[CEU][hapmap]
rs28946912	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs28948671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34032602	0.91[EUR][1000 genomes]
rs56123979	0.94[EUR][1000 genomes]
rs66567403	0.87[EUR][1000 genomes]
rs6709823	1.00[JPT][hapmap]
rs7593557	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234849600-234873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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