Variant report

Variant	rs28948671
Chromosome Location	chr2:234871749-234871750
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10166496	1.00[CEU][hapmap]
rs10169266	1.00[CEU][hapmap]
rs10490016	0.85[CHB][hapmap];0.85[EUR][1000 genomes]
rs11563211	1.00[CEU][hapmap]
rs12472151	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12992084	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13004520	0.90[EUR][1000 genomes]
rs13020968	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13024825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17863848	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17864749	0.93[EUR][1000 genomes]
rs17868387	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs28946910	1.00[CEU][hapmap]
rs28946912	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs34032602	0.90[EUR][1000 genomes]
rs56123979	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66567403	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7593557	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234849600-234873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr2:234869200-234873400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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