Variant report

Variant	rs13025515
Chromosome Location	chr2:185137075-185137076
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:185128748..185131745-chr2:185134110..185138355,3	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10803972	0.83[ASN][1000 genomes]
rs12475408	0.82[ASN][1000 genomes]
rs12993181	0.83[ASN][1000 genomes]
rs12996333	0.88[ASN][1000 genomes]
rs12997494	0.81[ASN][1000 genomes]
rs13000242	0.83[ASN][1000 genomes]
rs13003128	0.88[ASN][1000 genomes]
rs13004575	0.92[ASN][1000 genomes]
rs13015358	0.92[ASN][1000 genomes]
rs13025532	0.81[ASN][1000 genomes]
rs13028827	0.83[ASN][1000 genomes]
rs13033991	0.82[ASN][1000 genomes]
rs1455881	0.83[ASN][1000 genomes]
rs1526208	0.83[ASN][1000 genomes]
rs1526209	0.81[ASN][1000 genomes]
rs1526210	0.82[ASN][1000 genomes]
rs16825631	0.83[ASN][1000 genomes]
rs16825649	0.83[ASN][1000 genomes]
rs16825757	0.88[ASN][1000 genomes]
rs17582652	0.92[ASN][1000 genomes]
rs17615972	0.80[ASN][1000 genomes]
rs1852288	0.82[ASN][1000 genomes]
rs2369208	0.80[ASN][1000 genomes]
rs2369210	0.82[ASN][1000 genomes]
rs34244915	0.82[ASN][1000 genomes]
rs34378900	0.83[ASN][1000 genomes]
rs34596322	0.82[ASN][1000 genomes]
rs34892768	0.82[ASN][1000 genomes]
rs34947840	0.82[ASN][1000 genomes]
rs34955339	0.88[ASN][1000 genomes]
rs35267098	0.82[ASN][1000 genomes]
rs35453312	0.86[ASN][1000 genomes]
rs35501929	0.83[ASN][1000 genomes]
rs35769970	0.92[ASN][1000 genomes]
rs35808438	0.81[ASN][1000 genomes]
rs36000756	0.83[ASN][1000 genomes]
rs36118547	0.82[ASN][1000 genomes]
rs4143776	0.91[ASN][1000 genomes]
rs4355073	0.82[ASN][1000 genomes]
rs4455125	0.81[ASN][1000 genomes]
rs6705672	0.81[ASN][1000 genomes]
rs6722521	0.80[ASN][1000 genomes]
rs71430139	0.90[ASN][1000 genomes]
rs71430140	0.90[ASN][1000 genomes]
rs7602683	0.80[ASN][1000 genomes]
rs9283491	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875487	chr2:184737282-185186670	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv998904	chr2:184955270-185318483	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1012174	chr2:184956114-185316664	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv583993	chr2:184995947-185316457	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1002838	chr2:185035277-185289130	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv875490	chr2:185067733-185198135	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv834483	chr2:185082753-185227428	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv437303	chr2:185091908-185145099	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv875491	chr2:185091908-185158374	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv875492	chr2:185091908-185198135	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1013015	chr2:185094513-185151303	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2760580	chr2:185094525-185141033	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv12193	chr2:185099581-185139440	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv1003172	chr2:185100535-185141033	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1006174	chr2:185100535-185148412	Weak transcription Active TSS Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1006882	chr2:185100535-185154884	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1007300	chr2:185100535-185185314	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1011774	chr2:185100627-185289130	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
19	nsv875494	chr2:185104115-185287387	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
20	nsv1000867	chr2:185111536-185141033	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv875495	chr2:185112978-185234102	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv583998	chr2:185118489-185163906	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv583999	chr2:185126769-185166472	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv875496	chr2:185134237-185277167	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
25	nsv875497	chr2:185134237-185474770	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:185135400-185137400	Enhancers	K562	blood
2	chr2:185136000-185137600	Enhancers	Fetal Heart	heart
3	chr2:185137000-185137200	Enhancers	Fetal Kidney	kidney

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