Variant report
| Variant | rs13025825 |
|---|---|
| Chromosome Location | chr2:125744746-125744747 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TBP | chr2:125744547-125744864 | K562 | blood: | n/a | n/a |
| 2 | POLR2A | chr2:125744412-125744951 | K562 | blood: | n/a | n/a |
| 3 | POLR2A | chr2:125744382-125744929 | K562 | blood: | n/a | n/a |
| 4 | POLR2A | chr2:125744312-125744944 | K562 | blood: | n/a | n/a |
| 5 | POLR2A | chr2:125744354-125744933 | K562 | blood: | n/a | n/a |
| 6 | HEY1 | chr2:125744383-125744913 | K562 | blood: | n/a | n/a |
| 7 | POLR2A | chr2:125744386-125744875 | K562 | blood: | n/a | n/a |
| 8 | POLR2A | chr2:125744419-125744894 | K562 | blood: | n/a | n/a |
| 9 | NFYB | chr2:125744493-125744873 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU6-259P | TF binding region |
rSNPs within LD-proxies of this variant (count:1)
| rs_ID | r2[population] |
|---|---|
| rs34727806 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834361 | chr2:125601081-125810992 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv874991 | chr2:125692490-125901811 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv834362 | chr2:125733921-125907451 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
