Variant report

Variant	rs13030284
Chromosome Location	chr2:128158719-128158720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128144095..128150105-chr2:128153920..128160111,11	MCF-7	breast:
2	chr2:128111305..128113465-chr2:128157702..128159726,2	MCF-7	breast:
3	chr2:128143860..128148648-chr2:128154163..128162464,14	MCF-7	breast:
4	chr2:128154427..128157643-chr2:128157781..128161017,3	K562	blood:
5	chr2:128158177..128161164-chr2:128161262..128165115,3	K562	blood:
6	chr2:128156066..128157658-chr2:128157783..128160601,2	K562	blood:
7	chr2:128143318..128152182-chr2:128154033..128162255,17	K562	blood:

Variant related genes	Relation type
ENSG00000169967	Chromatin interaction
ENSG00000236682	Chromatin interaction

rs_ID	r²[population]
rs10209483	0.82[ASN][1000 genomes]
rs11680949	0.82[ASN][1000 genomes]
rs11691088	0.82[ASN][1000 genomes]
rs1518760	0.83[EUR][1000 genomes]
rs3732209	0.82[ASN][1000 genomes]
rs55998444	0.83[EUR][1000 genomes]
rs72845979	0.82[ASN][1000 genomes]
rs72845982	0.82[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs13030284	MAP3K2	cis	multi-tissue	Pritchard

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:128146600-128162600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:128150400-128165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:128152600-128165800	Weak transcription	Aorta	Aorta
5	chr2:128155000-128160400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr2:128155400-128160200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:128155800-128164800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:128156000-128162200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:128156000-128163800	Enhancers	A549	lung
10	chr2:128156200-128159000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:128156200-128159000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:128156200-128159000	Weak transcription	K562	blood
13	chr2:128156200-128159200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr2:128156200-128159800	Weak transcription	Spleen	Spleen
15	chr2:128156200-128161200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:128156200-128161200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:128156200-128162800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:128156200-128163000	Weak transcription	Brain Hippocampus Middle	brain
19	chr2:128156200-128163000	Weak transcription	Right Atrium	heart
20	chr2:128156200-128165200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:128156400-128158800	Weak transcription	HUVEC	blood vessel
22	chr2:128156400-128159000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:128156400-128161400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr2:128156400-128161400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr2:128156400-128164200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr2:128156800-128159200	Weak transcription	HSMMtube	muscle
27	chr2:128156800-128162000	Weak transcription	Lung	lung
28	chr2:128156800-128165200	Weak transcription	Pancreas	Pancrea
29	chr2:128157000-128165400	Weak transcription	Psoas Muscle	Psoas
30	chr2:128158000-128158800	Enhancers	Fetal Lung	lung
31	chr2:128158200-128158800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr2:128158200-128159000	Flanking Active TSS	Fetal Intestine Large	intestine
33	chr2:128158200-128159200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:128158200-128159200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr2:128158200-128159200	Enhancers	Right Ventricle	heart
36	chr2:128158200-128159200	Enhancers	NHLF	lung
37	chr2:128158200-128159600	Flanking Active TSS	NHEK	skin
38	chr2:128158200-128159800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:128158200-128159800	Enhancers	Placenta	Placenta
40	chr2:128158200-128159800	Enhancers	Fetal Thymus	thymus
41	chr2:128158200-128159800	Enhancers	Small Intestine	intestine
42	chr2:128158200-128159800	Enhancers	NH-A	brain
43	chr2:128158200-128160200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr2:128158200-128160200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr2:128158200-128160200	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr2:128158200-128160400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr2:128158200-128160400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr2:128158200-128160600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:128158400-128158800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr2:128158400-128158800	Flanking Active TSS	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links