Variant report

Variant	rs13031358
Chromosome Location	chr2:174016536-174016537
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173912619..173914756-chr2:174014173..174017350,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091428	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11676760	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12693018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13030567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13032024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1345005	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1345007	1.00[YRI][hapmap]
rs1548045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1866635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2119125	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4146109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4972396	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4972398	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4972537	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433391	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433393	1.00[AMR][1000 genomes]
rs6433394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433396	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433397	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6713429	1.00[AMR][1000 genomes]
rs6717152	1.00[YRI][hapmap]
rs6739869	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6741598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv834461	chr2:173979734-174038471	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174007800-174021000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:174007800-174021000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:174008600-174020800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:174012800-174016600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:174012800-174018000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:174012800-174018400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:174012800-174018400	Enhancers	HMEC	breast
8	chr2:174012800-174018400	Enhancers	Osteobl	bone
9	chr2:174012800-174018600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:174012800-174018600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:174012800-174018600	Enhancers	NHDF-Ad	bronchial
12	chr2:174012800-174018600	Enhancers	NHLF	lung
13	chr2:174012800-174020000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr2:174012800-174026600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr2:174013000-174017600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:174013000-174018000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:174013200-174017200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr2:174013200-174018600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:174013400-174025400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr2:174013600-174017200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:174013600-174018000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr2:174013600-174024600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:174014400-174017200	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr2:174014400-174017400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:174014400-174017400	Enhancers	HSMM	muscle
26	chr2:174014400-174018400	Enhancers	Hela-S3	cervix
27	chr2:174014600-174016800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr2:174014600-174018200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr2:174014600-174021000	Weak transcription	Ovary	ovary
30	chr2:174015200-174018200	Enhancers	NH-A	brain
31	chr2:174015400-174027400	Weak transcription	Fetal Muscle Leg	muscle
32	chr2:174015400-174047000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr2:174015800-174016600	Enhancers	Right Ventricle	heart
34	chr2:174015800-174017400	Enhancers	HUVEC	blood vessel
35	chr2:174015800-174018600	Weak transcription	Left Ventricle	heart
36	chr2:174016000-174016600	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr2:174016000-174016800	Enhancers	HSMMtube	muscle
38	chr2:174016000-174017000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr2:174016000-174017400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr2:174016000-174017400	Enhancers	Small Intestine	intestine
41	chr2:174016200-174016600	Enhancers	NHEK	skin
42	chr2:174016200-174017000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:174016200-174017000	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr2:174016200-174017000	Enhancers	Colon Smooth Muscle	Colon
45	chr2:174016200-174017600	Flanking Active TSS	A549	lung
46	chr2:174016200-174048800	Weak transcription	K562	blood
47	chr2:174016400-174016600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr2:174016400-174016800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr2:174016400-174016800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr2:174016400-174016800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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