Variant report

Variant	rs6433391
Chromosome Location	chr2:173930531-173930532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11676760	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12693018	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13030567	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13031358	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13032024	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1345005	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1548045	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1866635	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2119125	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4146109	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4972396	1.00[AMR][1000 genomes]
rs4972398	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4972537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433393	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6433396	1.00[AMR][1000 genomes]
rs6433397	1.00[AMR][1000 genomes]
rs6713429	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6739869	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6741598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv834460	chr2:173919464-174085288	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3407867	chr2:173930190-173930673	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173920600-173937200	Weak transcription	Psoas Muscle	Psoas
2	chr2:173928400-173932400	Weak transcription	Fetal Intestine Large	intestine
3	chr2:173928800-173930600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:173929200-173932200	Weak transcription	Fetal Intestine Small	intestine
5	chr2:173929400-173931600	Weak transcription	Fetal Lung	lung
6	chr2:173930400-173931400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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