Variant report

Variant	rs13032775
Chromosome Location	chr2:50629732-50629733
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:50571493..50572317-chr2:50629670..50630519,2	MCF-7	breast:
2	chr2:49173523..49174048-chr2:50629252..50630106,2	MCF-7	breast:
3	chr2:49997752..49998563-chr2:50629285..50629956,2	MCF-7	breast:
4	chr2:50629632..50630141-chr2:50719329..50719849,2	MCF-7	breast:
5	chr2:49482564..49483069-chr2:50629187..50629937,2	MCF-7	breast:

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10048731	0.80[EUR][1000 genomes]
rs10181522	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10182951	0.80[EUR][1000 genomes]
rs10184843	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10188271	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10191195	0.84[CHB][hapmap]
rs10191261	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10201390	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs10203960	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs10205311	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10209627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10210660	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10490228	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11125306	0.80[EUR][1000 genomes]
rs12465784	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12467043	0.91[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs12473243	0.82[AMR][1000 genomes]
rs12475335	0.82[AMR][1000 genomes]
rs12475464	0.95[CEU][hapmap]
rs12475979	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12476139	0.83[EUR][1000 genomes]
rs12613343	0.81[EUR][1000 genomes]
rs12619946	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12620045	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12713097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12713098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12713100	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12994492	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13005521	0.95[CEU][hapmap]
rs13014058	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs13014624	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13032292	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13382506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13392422	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs13396103	0.81[AMR][1000 genomes]
rs13407013	0.80[EUR][1000 genomes]
rs13421278	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs13430295	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13430435	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1402124	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1402128	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1520437	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1520438	0.81[EUR][1000 genomes]
rs1520439	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1520443	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1520446	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1520449	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1533692	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17040569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17040577	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17040600	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17040640	0.80[EUR][1000 genomes]
rs1818714	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1818715	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1818716	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1851015	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs2160443	0.80[EUR][1000 genomes]
rs2351517	0.91[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap]
rs34846571	0.80[EUR][1000 genomes]
rs4638832	0.81[ASN][1000 genomes]
rs57564327	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6709416	0.91[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6709865	0.81[EUR][1000 genomes]
rs6711307	0.80[EUR][1000 genomes]
rs6738086	0.81[EUR][1000 genomes]
rs6743117	0.80[EUR][1000 genomes]
rs6743562	0.81[EUR][1000 genomes]
rs6743584	0.80[EUR][1000 genomes]
rs6744418	0.81[EUR][1000 genomes]
rs6756081	0.80[AMR][1000 genomes]
rs7567375	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7581097	0.91[CEU][hapmap]
rs7585229	0.80[EUR][1000 genomes]
rs939402	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492164	chr2:50399251-51029090	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1000653	chr2:50417660-51083470	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv535693	chr2:50417660-51083470	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948548	chr2:50569117-50695100	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv948361	chr2:50611076-50785178	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv933786	chr2:50628354-50780185	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50629000-50629800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:50629000-50630000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:50629200-50630400	Enhancers	HUVEC	blood vessel
4	chr2:50629400-50629800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:50629400-50630000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:50629400-50630200	Weak transcription	Stomach Mucosa	stomach

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