Variant report

Variant	rs1533692
Chromosome Location	chr2:50647566-50647567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10048731	0.88[EUR][1000 genomes]
rs1005431	0.80[EUR][1000 genomes]
rs10181475	0.81[EUR][1000 genomes]
rs10181522	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10182951	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10190857	0.87[EUR][1000 genomes]
rs10205311	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10209627	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10490228	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11125306	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12465784	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12473243	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12475335	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12613343	0.88[EUR][1000 genomes]
rs12619946	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12620045	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12713097	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12713098	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12713100	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12994492	0.81[ASN][1000 genomes]
rs13032292	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13032775	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13390864	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13396103	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13407013	0.88[EUR][1000 genomes]
rs13407657	0.86[EUR][1000 genomes]
rs13407788	0.87[EUR][1000 genomes]
rs1520437	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1520438	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1520439	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1520449	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17040569	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17040577	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17040640	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1971698	0.80[EUR][1000 genomes]
rs2160443	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34846571	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57564327	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6709865	0.88[EUR][1000 genomes]
rs6711307	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6717441	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6718809	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6738086	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6743117	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6743562	0.89[EUR][1000 genomes]
rs6743584	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6744418	0.87[EUR][1000 genomes]
rs6747128	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6747258	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6756081	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6756219	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6756479	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7585229	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7585534	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9309182	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492164	chr2:50399251-51029090	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1000653	chr2:50417660-51083470	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv535693	chr2:50417660-51083470	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948548	chr2:50569117-50695100	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv948361	chr2:50611076-50785178	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv933786	chr2:50628354-50780185	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50646400-50649200	Enhancers	Brain Germinal Matrix	brain
2	chr2:50647200-50647600	Enhancers	Fetal Brain Female	brain
3	chr2:50647200-50648800	Enhancers	Fetal Brain Male	brain

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