Variant report

Variant	rs13033326
Chromosome Location	chr2:173851546-173851547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:173849114..173850688-chr2:173850735..173852782,2	K562	blood:
2	chr2:173850524..173852909-chr2:173853825..173856891,3	MCF-7	breast:
3	chr2:173844924..173850688-chr2:173851282..173855756,6	K562	blood:
4	chr2:173850441..173852065-chr2:173860790..173863463,2	MCF-7	breast:
5	chr2:173850484..173852151-chr2:173876423..173879303,2	K562	blood:
6	chr2:173848627..173852133-chr2:173863177..173865329,4	MCF-7	breast:
7	chr2:173849631..173852622-chr2:173858056..173860174,2	K562	blood:
8	chr2:173849354..173852622-chr2:173856420..173860174,4	K562	blood:
9	chr2:173839361..173841132-chr2:173850021..173852196,2	K562	blood:
10	chr2:173849142..173852598-chr2:173855356..173861233,5	MCF-7	breast:

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34125188	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35253091	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35527769	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7604728	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
4	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173835800-173886800	Weak transcription	Lung	lung
6	chr2:173842800-173855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:173843200-173861400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:173843400-173858200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:173845400-173853200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:173847800-173851800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:173848800-173854400	Weak transcription	Ovary	ovary
12	chr2:173849800-173861200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:173850000-173851600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:173850400-173855400	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:173850400-173855800	Weak transcription	Fetal Stomach	stomach
16	chr2:173850400-173864600	Weak transcription	Psoas Muscle	Psoas
17	chr2:173850600-173855600	Weak transcription	Fetal Brain Male	brain
18	chr2:173850600-173855600	Weak transcription	Left Ventricle	heart
19	chr2:173850600-173855800	Weak transcription	Brain Anterior Caudate	brain
20	chr2:173851000-173853400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr2:173851000-173855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:173851000-173855400	Weak transcription	Adipose Nuclei	Adipose
23	chr2:173851000-173859000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:173851000-173860400	Weak transcription	Fetal Heart	heart
25	chr2:173851000-173861000	Weak transcription	Fetal Kidney	kidney
26	chr2:173851200-173853000	Weak transcription	Liver	Liver
27	chr2:173851200-173853200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:173851200-173855200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:173851200-173855200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr2:173851200-173855200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:173851200-173855200	Weak transcription	A549	lung
32	chr2:173851200-173859600	Weak transcription	NHDF-Ad	bronchial
33	chr2:173851200-173860200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:173851200-173860200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links