Variant report

Variant	rs35253091
Chromosome Location	chr2:173850463-173850464
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:173849114..173850688-chr2:173850735..173852782,2	K562	blood:
2	chr2:173850441..173852065-chr2:173860790..173863463,2	MCF-7	breast:
3	chr2:173848627..173852133-chr2:173863177..173865329,4	MCF-7	breast:
4	chr2:173844924..173850688-chr2:173851282..173855756,6	K562	blood:
5	chr2:173848162..173850898-chr2:173858454..173860280,2	MCF-7	breast:
6	chr2:173849631..173852622-chr2:173858056..173860174,2	K562	blood:
7	chr2:173849354..173852622-chr2:173856420..173860174,4	K562	blood:
8	chr2:173846731..173848275-chr2:173848312..173850706,2	K562	blood:
9	chr2:173839361..173841132-chr2:173850021..173852196,2	K562	blood:
10	chr2:173849142..173852598-chr2:173855356..173861233,5	MCF-7	breast:
11	chr2:173838607..173842976-chr2:173848438..173851310,4	MCF-7	breast:

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13033326	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1992808	0.80[EUR][1000 genomes]
rs34125188	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35527769	0.82[AMR][1000 genomes]
rs7604728	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834459	chr2:173735192-173926750	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173833800-173855600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr2:173833800-173859000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:173833800-173860800	Weak transcription	Right Ventricle	heart
4	chr2:173834200-173855800	Weak transcription	Brain Angular Gyrus	brain
5	chr2:173835800-173886800	Weak transcription	Lung	lung
6	chr2:173842400-173850800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:173842800-173855800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr2:173843200-173861400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:173843400-173858200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:173845400-173853200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr2:173847800-173851800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr2:173848000-173851000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:173848800-173854400	Weak transcription	Ovary	ovary
14	chr2:173849400-173850600	Enhancers	Fetal Thymus	thymus
15	chr2:173849800-173850600	Enhancers	Fetal Brain Male	brain
16	chr2:173849800-173851200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:173849800-173851200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:173849800-173851200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:173849800-173851200	Flanking Active TSS	Hela-S3	cervix
20	chr2:173849800-173861200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:173850000-173850600	Enhancers	Brain Anterior Caudate	brain
22	chr2:173850000-173850600	Enhancers	Left Ventricle	heart
23	chr2:173850000-173850600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr2:173850000-173850800	Flanking Active TSS	HMEC	breast
25	chr2:173850000-173851000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr2:173850000-173851000	Enhancers	Primary hematopoietic stem cells	blood
27	chr2:173850000-173851000	Enhancers	Fetal Heart	heart
28	chr2:173850000-173851000	Enhancers	Stomach Mucosa	stomach
29	chr2:173850000-173851000	Flanking Active TSS	NHEK	skin
30	chr2:173850000-173851200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr2:173850000-173851200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr2:173850000-173851200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:173850000-173851200	Flanking Active TSS	A549	lung
34	chr2:173850000-173851200	Enhancers	HUVEC	blood vessel
35	chr2:173850000-173851400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:173850000-173851600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:173850200-173850600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr2:173850200-173850600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr2:173850200-173850600	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr2:173850200-173850600	Enhancers	Duodenum Mucosa	Duodenum
41	chr2:173850200-173850600	Enhancers	Placenta	Placenta
42	chr2:173850200-173850600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr2:173850200-173850600	Active TSS	Stomach Smooth Muscle	stomach
44	chr2:173850200-173850600	Flanking Bivalent TSS/Enh	HepG2	liver
45	chr2:173850200-173850600	Flanking Active TSS	HSMM	muscle
46	chr2:173850200-173850600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr2:173850200-173850600	Flanking Active TSS	Osteobl	bone
48	chr2:173850200-173850800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
49	chr2:173850200-173850800	Flanking Active TSS	Liver	Liver
50	chr2:173850200-173851000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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