Variant report

Variant	rs13036140
Chromosome Location	chr2:127246019-127246020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11682924	1.00[LWK][hapmap];1.00[AFR][1000 genomes]
rs11684235	1.00[AFR][1000 genomes]
rs11684984	1.00[AFR][1000 genomes]
rs11688466	1.00[AFR][1000 genomes]
rs11690602	1.00[AFR][1000 genomes]
rs11691316	1.00[AFR][1000 genomes]
rs12990019	0.83[AFR][1000 genomes]
rs12993851	1.00[AFR][1000 genomes]
rs12996594	1.00[AFR][1000 genomes]
rs12996629	1.00[AFR][1000 genomes]
rs12999041	1.00[AFR][1000 genomes]
rs13005708	0.83[AFR][1000 genomes]
rs13008004	1.00[AFR][1000 genomes]
rs13010045	1.00[AFR][1000 genomes]
rs13020607	1.00[AFR][1000 genomes]
rs13025129	0.83[AFR][1000 genomes]
rs13027486	1.00[LWK][hapmap]
rs13034238	1.00[AFR][1000 genomes]
rs34228135	1.00[AFR][1000 genomes]
rs34548924	0.83[AFR][1000 genomes]
rs34731630	1.00[AFR][1000 genomes]
rs34939949	1.00[AFR][1000 genomes]
rs34981967	1.00[AFR][1000 genomes]
rs35338260	1.00[AFR][1000 genomes]
rs35506144	1.00[AFR][1000 genomes]
rs35944462	0.83[AFR][1000 genomes]
rs36061035	1.00[AFR][1000 genomes]
rs56072540	0.83[AFR][1000 genomes]
rs66530889	1.00[AFR][1000 genomes]
rs66701958	1.00[AFR][1000 genomes]
rs66815786	1.00[AFR][1000 genomes]
rs66993274	1.00[AFR][1000 genomes]
rs67155347	1.00[AFR][1000 genomes]
rs67271291	0.83[AFR][1000 genomes]
rs67286117	1.00[AFR][1000 genomes]
rs67453660	0.83[AFR][1000 genomes]
rs72831489	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013181	chr2:126451639-127246965	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1001995	chr2:126506739-127314488	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1002265	chr2:127029745-127733458	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv535919	chr2:127029745-127733458	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv834364	chr2:127100752-127267070	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127245000-127246800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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